| \n", " | Index | \n", "Peptide | \n", "DNA | \n", "pep count | \n", "Dataset % | \n", "
|---|---|---|---|---|---|
| 0 | \n", "1 | \n", "YSKYDrRSPRDC | \n", "CACTATAGGGTTAACTTTAAGAAGGAGATATACATATGTCGAAGTA... | \n", "3108 | \n", "0.124177 | \n", "
| 1 | \n", "2 | \n", "YVYSrKEWKYC | \n", "CACTATAGGGTTAACTTTAAGAAGGAGATATACATATGGTGTATTC... | \n", "2408 | \n", "0.096209 | \n", "
| 2 | \n", "3 | \n", "YIYRYDrRIEWC | \n", "CACTATAGGGTTAACTATAAGAAGGAGATATACATATGATTTATCG... | \n", "2197 | \n", "0.087779 | \n", "
| 3 | \n", "4 | \n", "YRNrNWDLC | \n", "CACTATAGGGTTAACTTTAAGAAGGAGATATACATATGCGTAATAT... | \n", "1554 | \n", "0.062089 | \n", "
| 4 | \n", "5 | \n", "YWYrNWDFNKRC | \n", "CACTATAGGGTTAACTTTAAGAAGGAGATATACATATGTGGTATAT... | \n", "1543 | \n", "0.061649 | \n", "
| 5 | \n", "6 | \n", "YDPTFrNFGDYC | \n", "CACTATAGGGTTAACTTTAAGAAGGAGATATACATATGGATCCGAC... | \n", "1521 | \n", "0.060770 | \n", "
| 6 | \n", "7 | \n", "YIrGKEIC | \n", "CACTATAGGGTTAACTTTAAGAAGGAGATATACATATGATTATGGG... | \n", "1385 | \n", "0.055336 | \n", "
| 7 | \n", "8 | \n", "YLSrNFDTCrNC | \n", "CACTATAGGGTTAACTTTAAGAAGGAGATATACATATGTTGTCTAT... | \n", "1282 | \n", "0.051221 | \n", "
| 8 | \n", "9 | \n", "YSrKWTDRNIGC | \n", "CACTATAGGGTTAACTTTAAGAAGGAGATATACATATGTCGATGAA... | \n", "1194 | \n", "0.047705 | \n", "
| 9 | \n", "10 | \n", "YVYrDCTDWYC | \n", "CACTATAGGGTTAACTTTAAGAAGGAGATATACATATGGTTTATAT... | \n", "1096 | \n", "0.043790 | \n", "
| \n", " | Unnamed: 0 | \n", "elapsed time, s | \n", "PADI4_60min_r5 | \n", "
|---|---|---|---|
| 0 | \n", "NaN | \n", "NaN | \n", "8850608.0 | \n", "
| 1 | \n", "translate_dna | \n", "43.272 | \n", "8850608.0 | \n", "
| 2 | \n", "length_summary | \n", "3.234 | \n", "8850608.0 | \n", "
| 3 | \n", "length_summary | \n", "9.978 | \n", "8850608.0 | \n", "
| 4 | \n", "q_score_summary | \n", "7.007 | \n", "8850608.0 | \n", "
| 5 | \n", "fastq_count_summary | \n", "5.861 | \n", "8850608.0 | \n", "
| 6 | \n", "length_filter | \n", "4.051 | \n", "4401185.0 | \n", "
| 7 | \n", "constant_region_filter | \n", "0.990 | \n", "4349330.0 | \n", "
| 8 | \n", "variable_region_filter | \n", "12.051 | \n", "4229446.0 | \n", "
| 9 | \n", "q_score_filter | \n", "1.713 | \n", "2502873.0 | \n", "
| 10 | \n", "fetch_region | \n", "0.237 | \n", "2502873.0 | \n", "
| 11 | \n", "filter_ambiguous | \n", "7.723 | \n", "2502873.0 | \n", "
| 12 | \n", "sequence_level_convergence_summary | \n", "6.668 | \n", "2502873.0 | \n", "
| 13 | \n", "token_level_convergence_analysis | \n", "9.981 | \n", "2502873.0 | \n", "
| 14 | \n", "token_level_convergence_analysis | \n", "16.589 | \n", "2502873.0 | \n", "
| 15 | \n", "unpad_data | \n", "7.917 | \n", "2502873.0 | \n", "
| 16 | \n", "save_data | \n", "0.046 | \n", "2502873.0 | \n", "
| 17 | \n", "fastq_count_summary | \n", "6.074 | \n", "2502873.0 | \n", "
| 18 | \n", "fastq_count_summary | \n", "6.203 | \n", "2502873.0 | \n", "
| 19 | \n", "fastq_count_summary | \n", "2.749 | \n", "2502873.0 | \n", "
| 20 | \n", "fastq_count_summary | \n", "2.764 | \n", "2502873.0 | \n", "
| 21 | \n", "library_design_summary | \n", "0.062 | \n", "2502873.0 | \n", "
| 22 | \n", "umap_hdbscan_summary | \n", "44.996 | \n", "2502873.0 | \n", "
| \n", " | Index | \n", "Peptide | \n", "DNA | \n", "pep count | \n", "Dataset % | \n", "
|---|---|---|---|---|---|
| 0 | \n", "1 | \n", "NaN | \n", "CACTATAGGGTTAACTTTAAGAAGGAGATATACATACAGCTAGGAC... | \n", "268244 | \n", "3.030797 | \n", "
| 1 | \n", "2 | \n", "YGVSrLTYSE | \n", "CACTATAGGGTTAACTTTAAGAAGGAGATATACATATGGGTGTTTC... | \n", "223730 | \n", "2.527849 | \n", "
| 2 | \n", "3 | \n", "YDrRQRQRQLGRGAEKIGRAHV | \n", "CACTATAGGGTTAACTTTAAGAAGGAGATATACATATGGATATGCG... | \n", "194828 | \n", "2.201295 | \n", "
| 3 | \n", "4 | \n", "YSrRQRQRQLGRGAEKIGRAHV | \n", "CACTATAGGGTTAACTTTAAGAAGGAGATATACATATGAGTATGCG... | \n", "194238 | \n", "2.194629 | \n", "
| 4 | \n", "5 | \n", "YGKNrDGYSCWLRQRQRQLGRG | \n", "CACTATAGGGTTAACTTTAAGAAGGAGATATACATATGGGTAAGAA... | \n", "111199 | \n", "1.256400 | \n", "
| 5 | \n", "6 | \n", "YSrIDPHDRLVRQRQRQLGRGA | \n", "CACTATAGGGTTAACTTTAAGAAGGAGATATACATATGTCGATGAT... | \n", "65627 | \n", "0.741497 | \n", "
| 6 | \n", "7 | \n", "YNrRQRQRQLGRGAEKIGRAHV | \n", "CACTATAGGGTTAACTTTAAGAAGGAGATATACATATGAATATGCG... | \n", "36276 | \n", "0.409870 | \n", "
| 7 | \n", "8 | \n", "YFDrRQRQRQLGRGAEKIGRAH | \n", "CACTATAGGGTTAACTTTAAGAAGGAGATATACATATGTTTGATAT... | \n", "22111 | \n", "0.249825 | \n", "
| 8 | \n", "9 | \n", "YGVSrENYGC | \n", "CACTATAGGGTTAACTTTAAGAAGGAGATATACATATGGGTGTTTC... | \n", "21297 | \n", "0.240628 | \n", "
| 9 | \n", "10 | \n", "YRYDrRQRQRQLGRGAEKIGRA | \n", "CACTATAGGGTTAACTTTAAGAAGGAGATATACATATGCGTTATGA... | \n", "21105 | \n", "0.238458 | \n", "